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Scientific publications -Methodological development

Inversion of the X-ray transform from limited angle parallel beam region of interest data with applications to electron tomography

O. Öktem, E.T. Quinto. Accepted for publication in Proceedings in Applied Mathematics and Mechanics

Electron tomography: A short overview with an emphasis on the absorption potential model for the forward problem

D Fanelli and O. Öktem, Inverse Problems. Vol. 24, No. 1, 013001, 2008
Available online

Local Tomography in Electron Microscopy

O. Öktem and E.T. Quinto. SIAM Journal on Applied Mathematics, Vol. 68, No. 5, pp. 1282–1303, 2008

A decomposition scheme for 3D fuzzy objects based on fuzzy distance information

S. Svensson. Pattern Recognition Letters, 28(2):224-232, Jan. 2007.
Available online.

A componentwise iterated relative entropy regularization method with updated prior and regularization parameter

H. Rullgård, O. Öktem, and U. Skoglund. Inverse Problems, 23:2121-2139, 2007.
Available online.

Resolving the geometry of biomolecules imaged by cryo electron tomography

L. Bongini, D. Fanelli, S. Svensson, M. Gedda, F. Piazza, and U. Skoglund. Journal of Microscopy, 228:174-184, 2007.
Available online.

A dynamical study of antibody-antigen encounter reactions

L. Bongini, D. Fanelli, F. Piazza, P. De Los Rios, M. Sanner, U. Skoglund. Physical Biology, 4(3): 172-180, 2007.
Available online.

Flexibility description of the met protein stalk based on the use of non-uniform b-splines

M. Gedda and S. Svensson. In W. G. Kropatsch, M. Kampel, and A. Hansbury, editors, Computer Analysis of Images and Patterns (CAIP 2007), volume 4673 of Lecture Notes in Computer Science, pages 173-180, 2007.
Available online.

Using a fuzzy framework for delineation and decomposition of immunoglobulin G in cryo electron tomographic images

S. Svensson, M. Gedda, D. Fanelli, U. Skoglund, L.-G. Öfverstedt, and S. Sandin. In Y. Y. Tang, S. P. Wang, G. Lorette, D. S. Yeung, and H. Yan, editors, Proceedings The 18th International Conference on Pattern Recognition (ICPR 2006), volume 4, pages 520-523. IEEE Computer Society, 2006.
Available online.

Hierarchical chamfer matching based on propagation of gradient strengths

S. Svensson and I.-M. Sintorn. In A. Kuba, L. G. Nyúl, and K. Palágyi, editors, Discrete Geometry for Computer Imagery (DGCI2006), volume 4245 of Lecture Notes in Computer Science, pages 308-319, 2006.

Medial grey-level based representation for proteins in volume images

I.-M. Sintorn, M. Gedda, S. Mata, and S. Svensson.
In J. S. Marques, N. Pérez de la Blanca, and P. Pina, editors, Pattern Recognition and Image Analysis: Second Iberian Conference (IbPRIA 2005), Part II, volume 3523 of Lecture Notes in Computer Science, pages 421-428, Estoril, Portugal, 2005. Springer-Verlag.

Anticooperativity in diffusion-controlled reactions with pairs of anisotropic domains: A model for the antigen-antibody encounter

F. Piazza, P. De Los Rios, D. Fanelli, L. Bongini, and U. Skoglund U. European Biophysics Journal with Biophysics Letters, 34(7):899-911, 2005.
Available online.

Procedures for three-dimensional reconstruction from thin sections with electron tomography

U. Skoglund, L.-G. Öfverstedt, and B. Daneholt. In J. Schenkel, editors, RNP Particles, Splicing and Autoimmune Diseases, pages 72-94, chapter 4. ISBN 3-540-62448-1. Springer-Verlag, Berlin, 1998.